Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M10 Chr22q11-13_UniqueNum	BreastC_M10 Chr22q11-13_pVal	BreastC_M10 Chr22q11-13_Unique	ColonC_M17 Chr19 Chr11q Chr16_UniqueNum	ColonC_M17 Chr19 Chr11q Chr16_pVal	ColonC_M17 Chr19 Chr11q Chr16_Unique
GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	1	RANGAP1	4.15777799722e-07	15	8.31555599444e-07	APBA1|BRD1|DEPDC5|GRAMD4|HIRA|L3MBTL2|LIMK2|MAPK11|MICALL1|PHF5A|PICK1|POLR2F|SGSM3|TRABD|TRMU	88	3.71089015033e-29	ABCC10|AGRN|APBA3|ARHGEF11|ARMC6|ATN1|BICRA|CALR|CAMK2B|CAPN15|CIC|CNOT3|CPSF7|CSNK1G2|CUL7|DAZAP1|DOT1L|EPN1|FANCA|FBRSL1|FBXL19|FBXO46|FURIN|GATAD2A|HCFC1|HNRNPD|HNRNPU|ILF3|KAT8|KCTD13|KHSRP|KLF16|KMT2B|LPAR2|MAP2K2|MARK2|MBD3|MOGS|MTSS1L|MYO9B|NUP62|PHKG2|PIP5K1A|PRRC2A|PTBP1|QTRT1|R3HDM4|RANBP3|RASSF7|RBM14|RBM33|RNF121|RNF214|RNPS1|RPL18|SBNO2|SCAF1|SETD1A|SF1|SFSWAP|SH3BP5L|SLC39A3|SMARCA4|SMARCD1|SMG7|SMG9|SNRNP70|SPHK2|SPPL2B|SRRT|STK11|SZT2|TCF3|TCOF1|TICAM1|TLN1|TMEM86B|TMEM259|TNPO2|U2AF2|VARS|ZNF202|ZNF436-AS1|ZNF444|ZNF473|ZNF580|ZNF598|ZNF646
GSE369_PRE_VS_POST_IL6_INJECTION_SOCS3_KO_LIVER_DN	2	ARSA|RANGAP1	9.59352371004e-06	9	1.91870441828e-05	ASCC2|GRAMD4|HIRA|LZTR1|PPIL2|RHBDD3|SF3A1|SLC25A1|TXN2	43	3.23727127112e-12	AGRN|ANAPC15|ARAP1|ARRB2|ATP6V0A1|ATP6V0C|BLVRB|BSG|BTBD2|CLPTM1|CRAMP1|DDB1|DGKZ|FAM89B|GBF1|GCDH|GSTP1|MAP2K2|MAP3K11|MAZ|MYO9B|NAGPA|NUCB1|PIP5K1C|POLE|PRKCSH|RAB11B|RHOG|RNF40|SART1|SH3GL1|SLC43A1|STXBP2|SUPT5H|TECR|TMEM259|TRIM28|TSC2|TSR3|VPS11|WBP2|ZFPL1|ZYX
GSE45837_WT_VS_GFI1_KO_PDC_DN	0		3.61965978741e-05	10	7.23931595006e-05	ADSL|HDHD5|MRPL40|NIPSNAP1|POLR2F|SPECC1L|SUN2|TCF20|UQCR10|XRCC6	42	3.62475043277e-11	AAMP|BANP|CD2BP2|CLPTM1|COG4|COX6B1|COX8A|DDX49|DMAC2|DRAP1|ECI1|ECSIT|EEF2|EIF3F|EIF3K|ETFB|FUS|GANAB|LSM7|MPG|MRPL23|MRPS34|NDUFA7|NDUFS7|NTHL1|NUMA1|PIN1|PITPNM1|PLEKHJ1|POLR2I|PRMT1|PRPF31|PSMD8|PSMD13|RFXANK|RPS9|SAE1|SNRNP25|SNRPD2|TFPT|UBL5|UQCR11
Human Lung_Broet09_171genes (19176396-SuppTable3)	2	DGCR2|TMEM191A	5.45949482755e-06	6	1.09189896551e-05	C22ORF39|CLTCL1|ESS2|HIC2|MRPL40|UBE2L3	36	1.24382091969e-19	AP1G1|ATF7IP2|ATXN1L|CAPN15|CARHSP1|CFDP1|CLEC16A|CRAMP1|DHODH|DHX38|FAHD1|FAM234A|GSPT1|HAGH|KARS|MAP2K2|METTL22|MKL2|MRPL28|MRPS34|MSRB1|NDUFB10|NME3|NUBP1|NUBP2|PDPK1|PMM2|PSMD7|RMI2|RPL18|TERF2IP|TMEM170A|TMEM186|TXNL4B|USP7|ZNRF1
Human Lung_Mikkonen10_98genes (20035825-TableS5b)	2	AP1B1|PLXNB2	0.000214648600883	4	0.000295931252309	GUCD1|MICALL1|SUN2|TXNRD2	14	0.000133365949457	AKT1S1|ARHGAP35|BAX|EP400|GRAMD1A|NDE1|ONECUT2|POLE|SCYL1|SH2B1|SLC1A5|STK11|U2AF2|YAP1
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN	4	EWSR1|FOXRED2|RANGAP1|RRP7A	8.9039926915e-05	19	0.00017807985383	BCR|GCAT|GRAMD4|HDHD5|L3MBTL2|MCAT|MIF|MTFP1|PES1|POLR2F|POLR3H|PRR5|SNU13|SYNGR1|TOMM22|TRMU|TTLL12|ZNF74|ZNRF3	131	1.44542886822e-17	ADAM15|AKT2|ALG1|ALG3|ARHGDIA|ATAD3A|B3GAT3|B4GAT1|BDH1|C11ORF98|C19ORF70|CALR|CBX5|CCDC86|CCDC124|CCDC138|CD3EAP|CFDP1|CHMP1A|CHORDC1|CIAPIN1|CLPTM1|CORO7|CRAMP1|DCTPP1|DCUN1D5|DDIAS|DDX10|DDX19A|DEAF1|DEF8|DHODH|DUS3L|EARS2|EHBP1L1|EHD1|EI24|EIF3M|EIF4E2|ELOF1|EMC8|FAM118B|FAM173A|FARSA|FBRSL1|FUBP1|FUS|FUT4|GADD45GIP1|GOT2|GRWD1|GSPT1|HMOX2|HNRNPD|HSPBP1|ILF3|IPO7|LSM4|LSM7|MAZ|METTL26|MOGS|MPHOSPH6|MRI1|MRPL4|MRPL16|MRPL21|MRPL23|MRPS12|MRPS34|MSH6|MTCH2|NAGPA|NANOS1|NDUFA11|NDUFB7|NDUFB10|NDUFS3|NIP7|NME4|NRGN|NTHL1|NUP62|PAFAH1B2|PLD6|POLR2E|PPAN|PPP1R14B|PRKACA|PRPF31|PRR7|PTMA|RDH13|RHOT2|RNF126|RPS6KA4|S100A11|SFPQ|SKP2|SLC29A2|SLC37A4|SNHG4|SNRNP25|SNRNP70|SRRT|SSBP3|STIP1|STK11|TBL3|TCF3|TCOF1|TELO2|TEX261|TIMM8B|TIMM10|TIMM13|TMEM120B|TMEM147|TNPO2|TSR3|UBL5|UNC93B1|UQCC3|USP7|VARS|WDR74|WDR90|WT1|ZNF574|ZNHIT2|ZSCAN5A
KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN	6	CLPB|EWSR1|FOXRED2|PARVB|RANGAP1|RRP7A	2.26948502851e-05	20	4.53897005702e-05	BCR|FAM118A|GCAT|GRAMD4|HDHD5|L3MBTL2|MCAT|MIF|MTFP1|PES1|POLR2F|POLR3H|PRR5|SNU13|SYNGR1|TOMM22|TRMU|TTLL12|ZNF74|ZNRF3	153	2.30057220419e-23	ACAT1|ADAM15|AKT2|ALG1|ALG3|ARHGDIA|ATAD3A|B3GAT3|B4GAT1|BDH1|C11ORF98|C19ORF70|CALR|CCDC86|CCDC124|CCDC138|CD3EAP|CD320|CFDP1|CHMP1A|CHORDC1|CIAPIN1|CLPTM1|CORO7|CRAMP1|DAZAP1|DCTPP1|DCUN1D5|DDIAS|DDX10|DDX19A|DEAF1|DEF8|DHODH|DUS3L|EARS2|EI24|EIF3M|EIF4E2|ELOF1|EMC8|EXOSC5|FAM76B|FAM86B1|FAM118B|FAM173A|FARSA|FBL|FBRSL1|FUBP1|FUS|FUT4|GADD45GIP1|GOT2|GRWD1|GSPT1|HMOX2|HNRNPD|HOMER1|HSPBP1|ILF3|IPO7|ISOC2|JMJD8|KHSRP|LSM4|LSM7|MAZ|METTL26|MOGS|MPHOSPH6|MRI1|MRPL4|MRPL16|MRPL21|MRPL23|MRPS12|MRPS34|MSH6|MTCH2|NAGPA|NANOS1|NCLN|NDUFA11|NDUFAB1|NDUFB7|NDUFB10|NDUFS3|NIP7|NME4|NRGN|NTHL1|NUP62|NUP160|PAFAH1B2|PDCD2L|PLD6|POLR2E|PPAN|PPP1R14B|PRKACA|PRMT1|PRMT3|PRPF31|PRR7|PTMA|QTRT1|RDH13|RHOT2|RNF126|RPS6KA4|RUVBL2|SFPQ|SKP2|SLC29A2|SLC37A4|SLC39A3|SMARCD1|SNHG4|SNRNP25|SNRNP70|SRRT|SSBP3|SSSCA1|STIP1|STK11|TBL3|TCF3|TCOF1|TELO2|TEX261|THOP1|TIMM8B|TIMM10|TIMM13|TIMM50|TMEM120B|TMEM147|TNPO2|TOMM40|TRAP1|TSR3|UBL5|UNC93B1|UQCC3|USP7|VARS|WDR74|WDR90|WT1|ZNF574|ZNHIT2|ZSCAN5A
LU_EZH2_TARGETS_UP	0		5.30707584139e-06	14	2.57708682571e-06	ACO2|BIK|CBY1|CRYBB2|GUCD1|MAPK11|PDXP|PHF5A|RPS19BP1|TCF20|TOMM22|TRIOBP|UQCR10|ZMAT5	40	8.03706485707e-06	COMTD1|ELOB|ETFB|FAM71E1|GANAB|GFOD2|HYAL2|ISOC2|JOSD2|KLHDC3|LONP1|LSM7|MCRIP2|MEX3D|MGMT|MKNK2|MPG|NME3|PAGR1|PIH1D1|PITX1|PLEKHJ1|POLR2C|PPP1R14B|PSMC3|RPL36|RPS6KB2|RPUSD1|S100A13|SH3GL3|SSSCA1|STUB1|THOC3|TMEM216|TRAPPC5|TRIP6|WDR74|WDR83|ZNF629|ZW10
MODULE_350	2	ARSA|EWSR1	0.000240382376936	3	0.000480296418199	FAHD2A|RHBDD3|SBF1	15	4.683356722e-07	APBA3|CLPTM1|ECI1|FAM89B|MCRIP2|MON1B|MRPL4|MRPS12|NR1H2|NUCB1|POLR2E|RNF126|SF1|SNRNP70|TMEM134
MOOTHA_HUMAN_MITODB_6_2002	1	LMF2	0.000464870824857	12	0.000929740726976	ACO2|CYP27B1|GCAT|MPST|NDUFA6|SLC25A1|SLC25A17|TOMM22|TSPO|TST|TXN2|TXNRD2	64	9.22737431322e-10	ABCB8|ACAD8|ACAT1|ALDH2|BAD|BAX|BCAT2|BCKDHA|BDH1|CLPP|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|DHODH|DLAT|ECI1|EMC8|ETFB|FARSA|FDX1|FIBP|GCDH|GOT2|GPX4|LONP1|MBD3|MCCC1|MLYCD|MRPL2|MRPL4|MRPL11|MRPL16|MRPL17|MRPL34|MRPL48|MRPL49|MRPS12|MRPS34|MTCH2|NDUFA3|NDUFA7|NDUFAB1|NDUFB7|NDUFC2|NDUFS3|NDUFS7|NME4|OGDH|POLRMT|REXO2|RPL18A|SBNO2|SDHD|TBCB|TIMM8B|TIMM10|TIMM13|TIMM44|TOMM40|TRAP1|TUFM|UQCR11
MOOTHA_MITOCHONDRIA	1	LMF2	7.06706316315e-05	14	0.000141119507901	ACO2|BIK|CYP27B1|MB|MCAT|MPST|NDUFA6|SLC25A1|SLC25A17|TOMM22|TSPO|TST|TXN2|TXNRD2	60	2.21755362058e-07	ABCB8|ACAD8|ACAT1|ALDH2|BAX|BCAT2|BCKDHA|BDH1|COX4I1|COX6B1|COX8A|CPT1A|DDX28|DHODH|DLAT|ECI1|EMC8|ETFB|FARSA|FDX1|FIBP|GCDH|GOT2|GPX4|LCAT|LONP1|MBD3|MLYCD|MRPL2|MRPL4|MRPL11|MRPL16|MRPL17|MRPL28|MRPL34|MRPL48|MRPL49|MRPS12|MRPS34|MTCH2|NDUFA3|NDUFA7|NDUFAB1|NDUFB7|NDUFC2|NDUFS3|NME4|PAM16|POLRMT|SBNO2|SDHD|TBCB|TIMM8B|TIMM10|TIMM10B|TIMM13|TIMM44|TOMM40|TUFM|UQCR11
MOOTHA_PGC	1	RANGAP1	0.000146046053377	13	0.00029113111651	ACO2|ADSL|COMT|EEF1AKMT3|ID2|LRP5L|MRPL40|NDUFA6|PKM|PMM1|POLR2F|TXN2|UQCR10	56	9.60990244544e-07	AES|APBA3|ATN1|BSG|CARHSP1|CDC34|CDK18|CLPP|CMC2|COX8A|CPT1A|DNAJA3|ESRRA|ETFB|FAM96B|FBRS|FDX1|GCDH|GPI|GPX4|HSPBP1|LDHB|LONP1|MRPL4|MRPL11|MRPL34|MRPS12|MRPS34|MSRB1|MTCH2|NDUFAB1|NDUFS3|NFIX|PFKM|PGLS|PIGQ|POLR2E|PRDX2|PTDSS2|RAB40C|RHOD|RRM1|RUVBL2|S100A13|SAC3D1|SF1|SGTA|SMPD1|TIMM8B|TIMM10B|TIMM13|TIMM44|TMX2|TOMM40|TSC2|TUFM
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN	3	DGCR2|SMARCB1|ZDHHC8	2.80729815161e-06	16	4.23797538909e-06	ATP6V1E1|C22ORF39|COMT|DGCR6|ESS2|HIRA|MRPL40|NIPSNAP1|SLC25A1|ST13|TANGO2|TRMT2A|TST|TXNRD2|UFD1|UQCR10	62	1.37662091413e-06	ALDOA|ARHGAP35|ASNA1|B4GAT1|BSCL2|C19ORF25|C19ORF70|CARM1|CFDP1|CLNS1A|CORO7|CYB561A3|EIF3F|EIF3K|ELOB|ELOF1|FKBP2|GDE1|GPI|HAGH|HIGD2A|HMOX2|HSPBP1|IST1|KXD1|LAMTOR1|LYSMD4|METTL26|MRPL11|MRPL17|MRPL28|MRPS12|NDUFA7|NDUFA11|NDUFAB1|NDUFB10|NDUFS3|NDUFS7|NFIX|NR1H2|PPP1CA|PRDX2|PSMC3|PSMC4|RAD23A|RPL18|SAC3D1|SELENOH|SMIM7|SNRPD2|STIP1|TIMM8B|TLN1|TM7SF2|TMEM126A|TMEM147|TMEM208|TRIR|TRMT112|TXNL4B|UQCR11|VPS4A
Spliceosome	0		0.000306164330226	7	0.000538579452352	ESS2|PHF5A|SF3A1|SNRPD3|SNU13|TFIP11|ZMAT5	22	7.37492080992e-05	CACTIN|CWC15|DHX38|HNRNPM|HNRNPU|LSM4|LSM7|PRPF19|PRPF31|SART1|SF1|SF3A2|SF3B2|SF3B3|SF3B4|SNRNP25|SNRPA|SNRPD2|SUGP1|U2AF2|WDR83|XAB2
WONG_MITOCHONDRIA_GENE_MODULE	0		0.000180924078973	10	0.000116062901221	ATP6V1E1|GCAT|MCAT|MRPL40|NDUFA6|NIPSNAP1|SLC25A1|SLC25A17|TSPO|UQCR10	29	0.000245785256725	ACAT1|CLPP|COX4I1|COX6B1|COX8A|CPT1A|ECI1|FIBP|GCDH|GOT2|GPX4|KARS|LONP1|MRPL11|MRPL49|NDUFA3|NDUFA7|NDUFAB1|NDUFB10|NDUFC2|NDUFS3|NDUFV1|NME4|TIMM8B|TIMM10|TIMM13|TOMM40|TUFM|UQCR11
mitochondrial envelope [GoID:GO:0005740; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		3.03895907948e-05	21	6.0772169356e-05	AIFM3|BCL2L13|BIK|CHCHD10|CYP27B1|GCAT|GRAMD4|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|UQCR10	93	7.01223359429e-09	ABCB8|ACAD9|ACAT1|AMBRA1|ARL2|ATAD3A|ATP5D|ATP5L|BAD|BAX|BDH1|C19ORF70|CCDC90B|CIAPIN1|COA4|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|DHODH|DMAC2|DMPK|DNM2|ECI1|ECSIT|FAHD1|FKBP8|FOXRED1|GOT2|HIGD2A|MCCC1|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL16|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|OGDH|PAM16|PET100|PLD6|PTPMT1|QTRT1|RDH13|REXO2|RHOT2|RPS3|SDHD|SLC9B2|SLC25A29|SPNS1|THOP1|TIMM8B|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM126A|TMEM126B|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
mitochondrial membrane [GoID:GO:0031966; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		4.05118732329e-05	20	8.10076825639e-05	AIFM3|BCL2L13|BIK|CYP27B1|GCAT|GRAMD4|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|UQCR10	88	1.60639018735e-08	ABCB8|ACAD9|ACAT1|AMBRA1|ATAD3A|ATP5D|ATP5L|BAD|BAX|BDH1|C19ORF70|CCDC90B|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|DHODH|DMAC2|DMPK|DNM2|ECI1|ECSIT|FAHD1|FKBP8|FOXRED1|GOT2|HIGD2A|MCCC1|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL16|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|OGDH|PAM16|PET100|PLD6|PTPMT1|QTRT1|RDH13|RHOT2|RPS3|SDHD|SLC9B2|SLC25A29|SPNS1|TIMM8B|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM126A|TMEM126B|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
mitochondrial part [GoID:GO:0044429; evidenceTypes:IBA|IC|IDA|IEA|IMP|IPI|ISS|NAS|TAS]	0		5.98852884823e-05	25	0.000119770572573	ACO2|AIFM3|BCL2L13|BIK|CHCHD10|CYP27B1|GCAT|GRAMD4|MCAT|MIEF1|MRPL40|MTFP1|NDUFA6|NIPSNAP1|RNF185|SAMM50|SLC25A1|SLC25A17|SMDT1|TOMM22|TSPO|TST|TXN2|TXNRD2|UQCR10	129	4.39150577226e-12	ABCB8|ACAD8|ACAD9|ACAT1|ACSF3|ALDH2|ALKBH7|AMBRA1|ARL2|ATAD3A|ATG4D|ATP5D|ATP5L|BAD|BAX|BCAT2|BCKDHA|BDH1|C19ORF70|CCDC90B|CIAPIN1|CLPP|COA4|COQ9|COX4I1|COX6B1|COX8A|CPT1A|CYP24A1|D2HGDH|DDX28|DHODH|DHRS2|DLAT|DMAC2|DMPK|DNAJA3|DNM2|EARS2|ECI1|ECSIT|ETFB|FAHD1|FDX1|FDX1L|FKBP8|FOXRED1|GADD45GIP1|GCDH|GOT2|GPT2|HAGH|HIGD2A|KARS|LONP1|MARS2|MCCC1|MLYCD|MPG|MPV17L2|MRPL2|MRPL4|MRPL11|MRPL16|MRPL17|MRPL21|MRPL23|MRPL28|MRPL34|MRPL48|MRPL49|MRPL54|MRPS12|MRPS34|MTCH2|MTHFD1L|NAGS|NARS2|ND6|NDUFA3|NDUFA7|NDUFA11|NDUFA13|NDUFAB1|NDUFB7|NDUFB10|NDUFC2|NDUFS3|NDUFS7|NDUFV1|NME4|NRGN|NUDT2|OGDH|PAM16|PDK2|PET100|PLD6|POLRMT|PTPMT1|QTRT1|RDH13|REXO2|RHOT2|RPS3|RPUSD4|SARS2|SDHAF1|SDHAF2|SDHD|SLC9B2|SLC25A29|SPNS1|THOP1|TIMM8B|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TMEM126A|TMEM126B|TMEM135|TOMM40|TRAP1|TUFM|UQCC3|UQCR11
protein targeting [GoID:GO:0006605; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	1	ZDHHC8	0.000135338576899	12	0.00026184817119	GOLGA7B|HPS4|MICALL1|MIEF1|PEX26|PMM1|SAMM50|SREBF2|SYNGR1|TOMM22|TSPO|UBE2L3	46	8.82898260848e-06	AIP|AKT2|AP1M2|ATG4B|ATG4D|CDC37|DNLZ|GIPC1|GSK3A|KATNB1|NAGPA|NDUFA13|NUCB1|PAM16|PEX10|PMM2|PSMD8|RHOD|RPL13|RPL14|RPL18|RPL18A|RPL28|RPL36|RPL37A|RPL38|RPS3|RPS5|RPS9|RPS11|SAE1|SEC61A1|SPCS2|SRPRA|TIMM8B|TIMM10|TIMM10B|TIMM13|TIMM29|TIMM44|TIMM50|TOMM40|U2AF2|UBL5|VPS4A|VPS11
